Comparative microbiome analysis using four different sequencing
methods for mock community samples and Crohn’s disease samples

Mock community sample data

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Short read 16S V3-V4 amplicon sequencing

Short read shotgun metagenome sequencing 

Nanopore MinION full length 16S amplicon sequencing

Nanopore MinION rRNA operon amplicon sequencing

 

 

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Crohn’s disease samples

 

Short read 16S V3-V4 amplicon sequencing

Short read shotgun metagenome sequencing

Nanopore MinION full length 16S amplicon sequencing 

Nanopore MinION rRNA operon amplicon sequencing